• Ray A.J., Seaborn G., Vinatea L., Browdy C.L., and J.W. Leffler. 2012. Effects of biofloc reduction on microbial dynamics in minimal-exchange, superintensive shrimp (Litopenaeus vannamei) culture systems. Journal of the World Aquaculture Society 43(6): 790-801.
• Ray A.J., Dillon K.S., and J.M. Lotz. 2011. Water quality dynamics and shrimp (Litopenaeus vannamei) production in intensive, mesohaline culture systems with two levels of biofloc management. Aquacultural Engineering 45: 127-136.
• Ray A.J., Seaborn G., Wilde S.B., Leffler J.W., Lawson A., and C.L. Browdy. 2010. Characterization of microbial communities in minimal-exchange, intensive aquaculture systems and the effects of suspended solids management. Aquaculture 310: 130-138.
• Ray A.J., B.L. Lewis, C. L. Browdy, and J.W. Leffler. 2010. Suspended solids removal to improve shrimp (Litopenaeus vannamei) production and an evaluation of a plant-based feed in minimal-exchange, superintensive culture systems. Aquaculture 299: 89-98.

Book Chapters:

• Ray, A.J. 2014. Biofloc technology for super-intensive shrimp culture. Pages 177-198 In Y. Avnimelech, ed. Biofloc Technology: A Practical Guidebook, 3rd Ed., The World Aquaculture Society, Baton Rouge, Louisiana, USA.
• Browdy C.L., Ray A.J., Leffler J.W., and Y. Avnimelech. 2012. Biofloc based aquaculture systems. Pages 278-307 In J.H. Tidwell, ed. Aquaculture Production Systems, Wiley-Blackwell, Oxford, UK.
• Ray, A.J. 2012. Biofloc technology for super-intensive shrimp culture. Pages 167-187 In Y. Avnimelech, ed. Biofloc Technology: A Practical Guide Book, 2nd Ed., The World Aquaculture Society, Baton Rouge, Louisiana, USA.
• Ray A.J., A.J. Shuler, J.W. Leffler, and C.L. Browdy. 2009. Microbial ecology and management of biofloc systems. Pages 255-266 In C.L. Browdy and D.E. Jory, eds. The Rising Tide, Proceedings of the Special Session on Sustainable Shrimp Farming, World Aquaculture 2009. World Aquaculture Society, Baton Rouge, Louisiana.

Magazine Articles:

• Johannemann, M.E., Fleckenstein, L.J., and A.J. Ray. 2022. The Effects of Carbon: Nitrogen Ratio on Suspended-Growth Denitrification in Small-Scale, Closed-System Shrimp Farming. World Aquaculture Magazine. March 2022.
• Ray, A.J., Tierney T.W., Fleckenstein L.J., and J.C. Fisk. 2022. Alternative, low-cost artificial sea salt mixtures for intensive, indoor shrimp production. Responsible Seafood Advocate. July 25, 2022.
• Ray, A.J., and R. Rode. 2019. Small-scale, year-round shrimp farming in temperate climates. Aquaculture Magazine. February/March 2019 Issue: 34-35.
• Fleckenstein, L.J., Tierney, T.W., and A.J. Ray. 2018. Comparing biofloc, clear-water and hybrid RAS systems as tilapia nurseries. The Global Aquaculture Advocate. October 1, 2018.
• Ray, A.J., and J.M. Lotz. 2018. Comparing salinities in intensive, commercial-scale biofloc for Pacific white shrimp. The Global Aquaculture Advocate. April 16, 2018.
• Ray, A.J., Drury, T.H., and Cecil, A. 2017. Biofloc and clear-water RAS systems: a comparison. The Global Aquaculture Advocate. June 19, 2017. Number One Top Article of 2017.
• Ray, A.J., and J.M. Lotz. 2016. Testing shrimp growth in different biofloc systems. The Global Aquaculture Advocate. July 22, 2016.
• Ray, A.J. 2015. Indoor-raised shrimp find potential market in Kentucky State University test. The Global Aquaculture Advocate 18(6): 76-77.
• Ray, A.J., and J.M. Lotz. 2014. A method of intensive shrimp production: Faster growth, lower FCR. The Practical, Asian Aquaculture Network 5(17): 8-11.